Appendix C: Callout boxes

C.1 Introduction

Overview

I have embedded most of the pre-defined cross-references in callout boxes. The exceptions are figure (fig) and table (tbl)

What follows is an overview of

the cross-reference abbreviation,
the (changed) title and
the appearance of the different callout boxes.

- crossref-cnj-title: "R Code"             # replaces "Conjecture"
- crossref-cor-title: "Assessment"         # replaces "Corollary"
- crossref-def-title: "Experiment"         # remains  "Definition"
- crossref-exm-title: "R Code Collection"  # replaces  "Example"
- crossref-exr-title: "Exercise"           # remains  "Exercise"
- crossref-fig-title: "Screenshot"         # replaces "Figure"
- crossref-rem-title: "Remark  "           # remains  "Remark"
- crossref-lem-title: "Resource"           # replaces "Lemma"
- crossref-lst-title: "Listing / Output"   # replaces  "Listing"
- crossref-prp-title: "Procedure"          # replaces "Proposition"
- crossref-sol-title: "Solution"           # remains  "Solution"
- crossref-tbl-title: "Table"              # remains  "Table"
- crossref-thm-title: "Formula"            # replaces "Theorem" (needs "formula")

The following table lists all callout boxes. Besides of the difference between numbered boxes and unnumbered boxes there are two different types of (numbered) boxes:

Boxes with cross-references that are pre-defined in Quarto. They are listed in the Quarto documentation under Theorems and Proofs. Examples are Exercise (exr), Definition (def) and Conjecture (con).
- I have redefined most of the pre-defines labels in quarto.yml under the metadata heading language. For instance I replaced Definition with Experiment, Conjecture with R Code, but kept Exercise.
- The first three columns in (tbl?)–callout-boxes reflect these changes and document the current status. I have sorted the table by my box titles (first column).
Boxes that use cross-references defined by me. Examples are Bullet Lists (bul) and Checklists (tdo).

The fourth column snippet shows the shortcut to call the Markdown snippet I have prepared. (Learn more about RStudio code snippets.) For each of these snippets there exist a corresponding CSS style. As I am not very experienced in CSS I gratefully adapted code by Andreas Handel (2023). (I just noticed there there was recently an update (2025) that I still need to read.)

The fifth column is a reference to an empty example showing just the bones of the callout-boxes. It is not necessary to jump to the location. If you hover with the mouse over the link Quarto will show you a small version of the callout box.

Table C.1: Overview of call-out boxes metadata used in this book

My Title	Quarto	Ref	Snippet	Reference to example
Assessment	Corollary	—	my-assessment	Section C.2.1
Assessment	Corollary	cor	num-assessment	Section C.2.2
Bullet List	———-	—	my-bullet	Section C.3.1
Bullet List	———-	bul	num-bullet	Section C.3.2
Checklist	———-	—	my-check	Section C.4.1
Checklist	———-	tdo	num-check	Section C.4.2
Exercise	Exercise	—	my-exercise	Section C.5.1
Exercise	Exercise	exr	num-exercise	Section C.5.2
Exercise	Exercise	exr	ab-exercise	Section C.5.3
Exercise	Exercise	exr	abc-exercise	Section C.5.4
Experiment	Definition	—	my-experiment	Section C.6.1
Experiment	Definition	def	num-experiment	Section C.6.2
Important	———-	—	my-important	Section C.7.1
Listing / Output	Listing	lst	——————-	Section C.14
Objectives	———-	obj	my-objectives	Section C.8.1
Package Profile	———-	—	my-package	Section C.9.1
Package Profile	———-	—	packagebox	Section C.9.2
Procedure	Proposition	—	my-procedure	Section C.10.1
Procedure	Proposition	prp	num-procedure	Section C.10.2
R Code	Conjecture	—	my-r-code	Section C.11.1
R Code	Conjecture	cnj	num-r-code	Section C.11.2
R Code	Conjecture	cnj	num-r-code-listing	Section C.11.3
R Code Collection	Example	exm	ab-code	Section C.12.3
R Code Collection2	———-	col	ab-code2	Section C.12.4
R Code Shiny	Conjecture	cnj	num-r-shiny	Section C.18.1
Remark	Remark	—	my-remark	Section C.15.1
Remark	Remark	rem	num-remark	Section C.15.2
Report	———-	rep	num-report	Section C.16.1
Resource	Lemma		my-resource	Section C.17.1
Resource			num-resource	Section C.17.2
Screenshot	Figure		figure	Section C.13.1
Screenshot			figure-border	Section C.13.2
Solution			sr2	Section C.19.1
Solution			my-solution	Section C.19.2
Solution			num-solution	Section C.19.3
Table	Table		——————-	Section C.20
Tip	———-	—	my-tip	Section C.21.1
Typo	———-	—	my-typo	Section C.23.1
Theorem	Theorem		formula	Section C.22.1
Theorem	Theorem		my-theorem	Section C.22.2
Theorem	Theorem		num-theorem	Section C.22.3
Watch Out	———-		my-watch	Section C.24.1
Watch Out	———-		num-watch	Section C.24.2

C.2 Assesment

C.2.1 my-assessment

Title for assessment comes here

Here include text for assessment

C.2.2 num-assessment

Assessment C.1 : Numbered Assessment Title

Here include assessment text

C.3 Bullet

C.3.1 my-bullet

Title for bullet text

Here include bullet text

C.3.2 num-bullet

Bullet List C.1

: Title for bullet text

Here include bullet text

C.4 Check

C.4.1 my-check

Title for checklist text

Here include checklist text

C.4.2 num-check

Checklist C.1

: Title for checklist text

Here include checklist text

C.5 Exercise

C.5.1 my-exercise

Exercise Title

Here include exercise text

C.5.2 num-exercise

Exercise C.1 : Numbered Exercise Title

Here include exercise text

C.5.3 ab-exercise

Exercise C.2 : Numbered Exercise Title

exercise1
exercise2

R Code C.1 : Numbered R Code Title 1

Code

1 + 1

#> [1] 2

R Code C.2 b: Numbered R Code Title (Tidyverse)

Code

1 + 1

#> [1] 2

C.5.4 abc-exercise

Exercise C.3 : Title of abc-exercise

R Code C.3 : Title of code exercise

Solution C.1. : Title of solution

Solution C.2. : Title of Shiny app

#| '!! shinylive warning !!': |
#|   shinylive does not work in self-contained HTML documents.
#|   Please set `embed-resources: false` in your metadata.
#| standalone: true
#| viewerHeight: 550
#| components: [editor, viewer]

C.6 Experiment

C.6.1 my-experiment

Title of Experiment

Here include text for experiment

C.6.2 num-experiment

Experiment C.1 : Numbered Experiment Title

Here include text for experiment

C.7 Important

C.7.1 my-important

Important Title

Here include text for important box

C.8 Objectives

C.8.1 my-objectives

Learning Objectives:

Here include text for objectives

C.9 Package

C.9.1 my-package

Package Name

Here include package description

C.9.2 packagebox

C.9.2.1 package-name

Package Profile: package-name

title (Wickham et al. 2023)

(There is no HEXAGON sticker available for {package-name}.)

short description

personal comment

This above snippets generates also a level two header and is intended for my annex chapter Appendix A. I have changed the level two header to a level four header, otherwise it would destroy my section structure of this chapter.

Additionally this snippets needs an image (or the deletion of the corresponding code lines) and bibliography (reference tot the author of the package).

C.10 Proposition / Procedure

C.10.1 my-procedure

Procedure Title

Here include procedure text

C.10.2 num-procedure

Procedure C.1 : Numbered Procedure Title

Here include procedure text

C.11 R Code

C.11.1 my-r-code

Title for R-Code

Here include code lines

C.11.2 num-r-code

R Code C.4 : Numbered R Code Title

Code

1 + 1

#> [1] 2

C.11.3 num-r-code-listing

R Code C.5 : Numbered R Code Listing Title

Listing / Output C.1: Listing title

Code

1 + 1

#> [1] 2

C.12 R Code Collection

C.12.1 my-example

Title for my example

Here include text

C.12.2 num-example

Code Collection C.1 : Numbered Example Title

Here include example text

C.12.3 ab-code

Code Collection C.2 : Title for code collection

header1
header2

R Code C.6 : Numbered R Code Title (Original)

Code

1 + 1

#> [1] 2

R Code C.7 : Numbered R Code Title (Tidyverse)

Code

1 + 1

#> [1] 2

C.12.4 ab-code2

Collection Code C.1

header1
header2

R Code C.8 : Numbered R Code Title (Original)

Listing / Output C.2: Listing text

Code

1 + 1

#> [1] 2

R Code C.9 : Numbered R Code Title (Tidyverse)

Listing / Output C.3: Listing text

Code

1 + 1

#> [1] 2

C.13 Screenshot

C.13.1 figure

alt-text — Screenshot C.1: Demonstration

C.13.2 figure-border

C.14 Listing / Listing/Output

There is no snippet for listings. Listings is included in num-r-code-listing (see: Section C.11.3).

C.15 Remark

C.15.1 my-remark

Title for remark

Here include remark lines

C.15.2 num-remark

Remark C.1. : Numbered Remark Title

Here include remark text

C.16 Report

C.16.1 num-report

Report C.1

: Numbered Reportbox Title

Here include report box text

C.17 Resource

C.17.1 my-resource

Title for resource

Here include resource text

C.17.2 num-resource

Resource C.1 : Numbered Resource Title

Here include text for the resource

C.18 R Code Shiny

C.18.1 num-r-shiny

R Code C.10 : Numbered R Code Title

#| '!! shinylive warning !!': |
#|   shinylive does not work in self-contained HTML documents.
#|   Please set `embed-resources: false` in your metadata.
#| standalone: true
#| viewerHeight: 550
#| components: [editor, viewer]
#| layout: vertical

library(shiny)

start coding here

C.19 Solution

C.19.1 sr2

Exercise ID: Header

Description more in Detail

My Solution

Here comes the solution

The above box is intended for the text description of a task or challenge, followed by the R code as the solution. But it has no numbering!

C.19.2 my-solution

Solution:

Here include solution text

C.19.3 num-solution

Solution C.3. : Numbered Solution Title

Here include text for the solution

C.20 Table / Table

No changes, no snippet.

C.21 Tip

C.21.1 my-tip

Title for Tip / Hint

Here include text for tip / hint box

C.22 Theorem

C.22.1 formula

\[ \begin{align*} formula \end{align*} \tag{C.1}\]

Read Mathematics in R Markdown

The numbering for theorems / formula is different than from the other cross-references / callout boxes.

C.22.2 my-theorem

Title of theorem

Here include theorem text

C.22.3 num-theorem

Formula C.1 : Numbered Theorem Title

\[ \begin{align*} \text{Here include text for the theorem} \end{align*} \tag{C.2}\]

C.23 Typo

C.23.1 my-typo

Typo Title

Here include typo text

C.24 Watch

C.24.1 my-watch

Title for watch-out text

Here include watch-out text

C.24.2 num-watch

Watch-out C.1

: Title for watch-out text

Here include watch-out text

C.25 Glossary Entries

term	definition
CSS	Cascading Style Sheets (CSS) is a style sheet language used for specifying the presentation and styling of a document written in a markup language such as HTML or XML (including XML dialects such as SVG, MathML or XHTML). CSS is a cornerstone technology of the World Wide Web, alongside HTML and JavaScript. CSS is designed to enable the separation of content and presentation, including layout, colors, and fonts. (<a href="https://en.wikipedia.org/wiki/CSS">Wikipedia</a>)

Session Info

Code

sessioninfo::session_info()

#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.5.0 (2025-04-11)
#>  os       macOS Sequoia 15.5
#>  system   aarch64, darwin20
#>  ui       X11
#>  language (EN)
#>  collate  en_US.UTF-8
#>  ctype    en_US.UTF-8
#>  tz       Europe/Vienna
#>  date     2025-06-23
#>  pandoc   3.7.0.2 @ /opt/homebrew/bin/ (via rmarkdown)
#>  quarto   1.8.4 @ /usr/local/bin/quarto
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package      * version    date (UTC) lib source
#>  cli            3.6.5      2025-04-23 [1] CRAN (R 4.5.0)
#>  commonmark     1.9.5      2025-03-17 [1] CRAN (R 4.5.0)
#>  curl           6.3.0      2025-06-06 [1] CRAN (R 4.5.0)
#>  dichromat      2.0-0.1    2022-05-02 [1] CRAN (R 4.5.0)
#>  digest         0.6.37     2024-08-19 [1] CRAN (R 4.5.0)
#>  evaluate       1.0.3      2025-01-10 [1] CRAN (R 4.5.0)
#>  farver         2.1.2      2024-05-13 [1] CRAN (R 4.5.0)
#>  fastmap        1.2.0      2024-05-15 [1] CRAN (R 4.5.0)
#>  glossary     * 1.0.0.9003 2025-06-08 [1] local
#>  glue           1.8.0      2024-09-30 [1] CRAN (R 4.5.0)
#>  htmltools      0.5.8.1    2024-04-04 [1] CRAN (R 4.5.0)
#>  htmlwidgets    1.6.4      2023-12-06 [1] CRAN (R 4.5.0)
#>  jsonlite       2.0.0      2025-03-27 [1] CRAN (R 4.5.0)
#>  kableExtra     1.4.0      2024-01-24 [1] CRAN (R 4.5.0)
#>  knitr          1.50       2025-03-16 [1] CRAN (R 4.5.0)
#>  lifecycle      1.0.4      2023-11-07 [1] CRAN (R 4.5.0)
#>  litedown       0.7        2025-04-08 [1] CRAN (R 4.5.0)
#>  magrittr       2.0.3      2022-03-30 [1] CRAN (R 4.5.0)
#>  markdown       2.0        2025-03-23 [1] CRAN (R 4.5.0)
#>  R6             2.6.1      2025-02-15 [1] CRAN (R 4.5.0)
#>  RColorBrewer   1.1-3      2022-04-03 [1] CRAN (R 4.5.0)
#>  rlang          1.1.6      2025-04-11 [1] CRAN (R 4.5.0)
#>  rmarkdown      2.29       2024-11-04 [1] CRAN (R 4.5.0)
#>  rstudioapi     0.17.1     2024-10-22 [1] CRAN (R 4.5.0)
#>  rversions      2.1.2      2022-08-31 [1] CRAN (R 4.5.0)
#>  scales         1.4.0      2025-04-24 [1] CRAN (R 4.5.0)
#>  sessioninfo    1.2.3      2025-02-05 [1] CRAN (R 4.5.0)
#>  stringi        1.8.7      2025-03-27 [1] CRAN (R 4.5.0)
#>  stringr        1.5.1      2023-11-14 [1] CRAN (R 4.5.0)
#>  svglite        2.2.1      2025-05-12 [1] CRAN (R 4.5.0)
#>  systemfonts    1.2.3      2025-04-30 [1] CRAN (R 4.5.0)
#>  textshaping    1.0.1      2025-05-01 [1] CRAN (R 4.5.0)
#>  vctrs          0.6.5      2023-12-01 [1] CRAN (R 4.5.0)
#>  viridisLite    0.4.2      2023-05-02 [1] CRAN (R 4.5.0)
#>  xfun           0.52       2025-04-02 [1] CRAN (R 4.5.0)
#>  xml2           1.3.8      2025-03-14 [1] CRAN (R 4.5.0)
#>  yaml           2.3.10     2024-07-26 [1] CRAN (R 4.5.0)
#> 
#>  [1] /Library/Frameworks/R.framework/Versions/4.5-arm64/library
#>  [2] /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library
#>  * ── Packages attached to the search path.
#> 
#> ──────────────────────────────────────────────────────────────────────────────

References

Handel, Andreas. 2023. “How to Make Custom Callouts for Quarto Andreas Handel.” https://www.andreashandel.com/posts/2023-06-13-custom-callouts-quarto/.

———. 2025. “Custom Formatting of Components in Quarto with Divs Andreas Handel.” https://www.andreashandel.com/posts/2025-03-05-custom-quarto-divs/.

Wickham, Hadley, Romain François, Lionel Henry, Kirill Müller, and Davis Vaughan. 2023. “Dplyr: A Grammar of Data Manipulation.” https://doi.org/10.32614/CRAN.package.dplyr.

# Callout boxes {#sec-annex-callout-boxes} ## Introduction ::::: {#obj-annex-callout-boxes} :::: {.my-objectives} ::: {.my-objectives-header} Overview ::: ::: {.my-objectives-container} I have embedded most of the pre-defined cross-references in callout boxes. The exceptions are figure (`fig`) and table (`tbl`) What follows is an overview of - the cross-reference abbreviation, - the (changed) title and - the appearance of the different callout boxes. ```markdown - crossref-cnj-title: "R Code" # replaces "Conjecture" - crossref-cor-title: "Assessment" # replaces "Corollary" - crossref-def-title: "Experiment" # remains "Definition" - crossref-exm-title: "R Code Collection" # replaces "Example" - crossref-exr-title: "Exercise" # remains "Exercise" - crossref-fig-title: "Screenshot" # replaces "Figure" - crossref-rem-title: "Remark " # remains "Remark" - crossref-lem-title: "Resource" # replaces "Lemma" - crossref-lst-title: "Listing / Output" # replaces "Listing" - crossref-prp-title: "Procedure" # replaces "Proposition" - crossref-sol-title: "Solution" # remains "Solution" - crossref-tbl-title: "Table" # remains "Table" - crossref-thm-title: "Formula" # replaces "Theorem" (needs "formula") ``` The following table lists all callout boxes. Besides of the difference between numbered boxes and unnumbered boxes there are two different types of (numbered) boxes: - Boxes with cross-references that are pre-defined in Quarto. They are listed in the Quarto documentation under [Theorems and Proofs](https://quarto.org/docs/authoring/cross-references.html#theorems-and-proofs). Examples are Exercise (`exr`), Definition (`def`) and Conjecture (`con`). - I have redefined most of the pre-defines labels in `quarto.yml` under the metadata heading `language`. For instance I replaced `Definition` with `Experiment`, `Conjecture` with `R Code`, but kept `Exercise`. - The first three columns in @tbl--callout-boxes reflect these changes and document the current status. I have sorted the table by my box titles (first column). - Boxes that use cross-references defined by me. Examples are Bullet Lists (`bul`) and Checklists (`tdo`). The fourth column `snippet` shows the shortcut to call the Markdown snippet I have prepared. (Learn more about [RStudio code snippets](https://support.posit.co/hc/en-us/articles/204463668-Code-Snippets-in-the-RStudio-IDE).) For each of these snippets there exist a corresponding `r glossary("CSS")` style. As I am not very experienced in CSS I gratefully adapted code by Andreas Handel [-@handel-2023]. (I just noticed there there was recently an update [-@handel-2025] that I still need to read.) The fifth column is a reference to an empty example showing just the bones of the callout-boxes. It is not necessary to jump to the location. If you hover with the mouse over the link Quarto will show you a small version of the callout box. | My Title | Quarto | Ref | Snippet | Reference to example | |:-------------------|:------------|:----|:--------------------|:-------------------------------| | Assessment | Corollary | --- | my-assessment | @sec-annex-my-assessment | | Assessment | Corollary | cor | num-assessment | @sec-annex-num-assessment | | Bullet List | ---------- | --- | my-bullet | @sec-annex-my-bullet | | Bullet List | ---------- | bul | num-bullet | @sec-annex-num-bullet | | Checklist | ---------- | --- | my-check | @sec-annex-my-check | | Checklist | ---------- | tdo | num-check | @sec-annex-num-check | | Exercise | Exercise | --- | my-exercise | @sec-annex-my-exercise | | Exercise | Exercise | exr | num-exercise | @sec-annex-num-exercise | | Exercise | Exercise | exr | ab-exercise | @sec-annex-ab-exercise | | Exercise | Exercise | exr | abc-exercise | @sec-annex-abc-exercise | | Experiment | Definition | --- | my-experiment | @sec-annex-my-experiment | | Experiment | Definition | def | num-experiment | @sec-annex-num-experiment | | Important | ---------- | --- | my-important | @sec-annex-my-important | | Listing / Output | Listing | lst | ------------------- | @sec-annex-listing-output | | Objectives | ---------- | obj | my-objectives | @sec-annex-my-objectives | | Package Profile | ---------- | --- | my-package | @sec-annex-my-package | | Package Profile | ---------- | --- | packagebox | @sec-annex-packagebox | | Procedure | Proposition | --- | my-procedure | @sec-annex-my-procedure | | Procedure | Proposition | prp | num-procedure | @sec-annex-num-procedure | | R Code | Conjecture | --- | my-r-code | @sec-annex-my-r-code | | R Code | Conjecture | cnj | num-r-code | @sec-annex-num-r-code | | R Code | Conjecture | cnj | num-r-code-listing | @sec-annex-num-r-code-listing | | R Code Collection | Example | exm | ab-code | @sec-annex-ab-code | | R Code Collection2 | ---------- | col | ab-code2 | @sec-annex-ab-code2 | | R Code Shiny | Conjecture | cnj | num-r-shiny | @sec-annex-num-r-shiny | | Remark | Remark | --- | my-remark | @sec-annex-my-remark | | Remark | Remark | rem | num-remark | @sec-annex-num-remark | | Report | ---------- | rep | num-report | @sec-annex-num-report | | Resource | Lemma | | my-resource | @sec-annex-my-resource | | Resource | | | num-resource | @sec-annex-num-resource | | Screenshot | Figure | | figure | @sec-annex-figure | | Screenshot | | | figure-border | @sec-annex-figure-border | | Solution | | | sr2 | @sec-annex-sr2 | | Solution | | | my-solution | @sec-annex-my-solution | | Solution | | | num-solution | @sec-annex-num-solution | | Table | Table | | ------------------- | @sec-annex-table | | Tip | ---------- | --- | my-tip | @sec-annex-my-tip | | Typo | ---------- | --- | my-typo | @sec-annex-my-typo | | Theorem | Theorem | | formula | @sec-annex-formula | | Theorem | Theorem | | my-theorem | @sec-annex-my-theorem | | Theorem | Theorem | | num-theorem | @sec-annex-num-theorem | | Watch Out | ---------- | | my-watch | @sec-annex-my-watch | | Watch Out | ---------- | | num-watch | @sec-annex-num-watch | : Overview of call-out boxes metadata used in this book {#tbl-callout-boxes} ::: :::: ::::: ## Assesment ### my-assessment {#sec-annex-my-assessment} :::::{.my-assessment} :::{.my-assessment-header} Title for assessment comes here ::: ::::{.my-assessment-container} Here include text for assessment :::: ::::: ### num-assessment {#sec-annex-num-assessment} :::::{.my-assessment} :::{.my-assessment-header} :::::: {#cor-assess} : Numbered Assessment Title :::::: ::: ::::{.my-assessment-container} Here include assessment text :::: ::::: ## Bullet ### my-bullet {#sec-annex-my-bullet} :::::{.my-bullet} :::{.my-bullet-header} Title for bullet text ::: ::::{.my-bullet-container} Here include bullet text :::: ::::: ### num-bullet {#sec-annex-num-bullet} :::{.num-bullet} :::: {.num-bullet-header} ::::: {.num-bullet-icon} ::::: :::::: {#bul-Bullet-ID} :::::: : Title for bullet text :::: :::: {.num-bullet-body} Here include bullet text :::: ::: ## Check ### my-check {#sec-annex-my-check} :::::{.my-check} :::{.my-check-header} Title for checklist text ::: ::::{.my-check-container} Here include checklist text :::: ::::: ### num-check {#sec-annex-num-check} :::{.num-check} :::: {.num-check-header} ::::: {.num-check-icon} ::::: :::::: {#tdo-Checklist-ID} :::::: : Title for checklist text :::: :::: {.num-check-body} Here include checklist text :::: ::: ## Exercise ### my-exercise {#sec-annex-my-exercise} :::::{.my-exercise} :::{.my-exercise-header} Exercise Title ::: ::::{.my-exercise-container} Here include exercise text :::: ::::: ### num-exercise {#sec-annex-num-exercise} :::::{.my-exercise} :::{.my-exercise-header} :::::: {#exr-ID-text} : Numbered Exercise Title :::::: ::: ::::{.my-exercise-container} Here include exercise text :::: ::::: ### ab-exercise {#sec-annex-ab-exercise} :::::{.my-exercise} :::{.my-exercise-header} :::::: {#exr-ID-text} : Numbered Exercise Title :::::: ::: ::::{.my-exercise-container} ::: {.panel-tabset} ###### exercise1 :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-code-name} : Numbered R Code Title 1 :::::: ::: ::::{.my-r-code-container} ```{r} #| label: experiment-1 1 + 1 ``` :::: ::::: ###### exercise2 :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-code-name-b} b: Numbered R Code Title (Tidyverse) :::::: ::: ::::{.my-r-code-container} ```{r} #| label: experiment-2 1 + 1 ``` :::: ::::: ::: :::: ::::: ### abc-exercise {#sec-annex-abc-exercise} :::::{.my-exercise} :::{.my-exercise-header} :::::: {#exr-ID} : Title of abc-exercise :::::: ::: ::::{.my-exercise-container} ::: {.panel-tabset} ###### Challenge :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-ID-WHAT-challenge} : Title of code exercise :::::: ::: ::::{.my-r-code-container} ```{r} #| label: app-challenge #| eval: false #| code-fold: show #| code-summary: "Description of task" ``` :::: ::::: ###### Solution (Code) :::::{.my-solution} :::{.my-solution-header} :::::: {#sol-ID-WHAT-app-solution} : Title of solution :::::: ::: ::::{.my-solution-container} ```{r} #| label: -app-solution #| eval: false #| code-fold: show ``` :::: ::::: ###### Solution (Shiny) :::::{.my-solution} :::{.my-solution-header} :::::: {#sol-ID-WHAT-app-shiny} : Title of Shiny app :::::: ::: ::::{.my-solution-container} ```{shinylive-r} #| standalone: true #| viewerHeight: 550 #| components: [editor, viewer] ``` :::: ::::: ::: :::: ::::: ## Experiment ### my-experiment {#sec-annex-my-experiment} :::::{.my-experiment} :::{.my-experiment-header} Title of Experiment ::: ::::{.my-experiment-container} Here include text for experiment :::: ::::: ### num-experiment {#sec-annex-num-experiment} :::::{.my-experiment} :::{.my-experiment-header} :::::: {#def-experiment-text} : Numbered Experiment Title :::::: ::: ::::{.my-experiment-container} Here include text for experiment :::: ::::: ## Important ### my-important {#sec-annex-my-important} :::::{.my-important} :::{.my-important-header} Important Title ::: ::::{.my-important-container} Here include text for important box :::: ::::: ## Objectives ### my-objectives {#sec-annex-my-objectives} :::::{.my-objectives} :::{.my-objectives-header} Learning Objectives: ::: ::::{.my-objectives-container} Here include text for objectives :::: ::::: ## Package ### my-package {#sec-annex-my-package} :::::{.my-package} :::{.my-package-header} Package Name ::: ::::{.my-package-container} Here include package description :::: ::::: ### packagebox {#sec-annex-packagebox} #### package-name {#sec-annex-package-name} :::::: my-packagebox ::: my-packagebox-header Package Profile: package-name ::: ------------------------------------------------------------------------ :::: my-packagebox-container <center>[title](url) [@dplyr]</center> ------------------------------------------------------------------------ <center>(There is no HEXAGON sticker available for {**package-name**}.)</center> ------------------------------------------------------------------------ ::: {layout="[10, 30]" layout-valign="center"} ![](img/logoi/logo-dplyr-min.png){width="176"} short description ::: ------------------------------------------------------------------------ personal comment :::: :::::: This above snippets generates also a level two header and is intended for my annex chapter @sec-annex-packages-used. I have changed the level two header to a level four header, otherwise it would destroy my section structure of this chapter. Additionally this snippets needs an image (or the deletion of the corresponding code lines) and bibliography (reference tot the author of the package). ## Proposition / Procedure ### my-procedure {#sec-annex-my-procedure} :::::{.my-procedure} :::{.my-procedure-header} Procedure Title ::: ::::{.my-procedure-container} Here include procedure text :::: ::::: ### num-procedure {#sec-annex-num-procedure} :::::{.my-procedure} :::{.my-procedure-header} :::::: {#prp-ID-text} : Numbered Procedure Title :::::: ::: ::::{.my-procedure-container} Here include procedure text :::: ::::: ## R Code ### my-r-code {#sec-annex-my-r-code} :::::{.my-r-code} :::{.my-r-code-header} Title for R-Code ::: ::::{.my-r-code-container} Here include code lines :::: ::::: ### num-r-code {#sec-annex-num-r-code} :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-ID-text} : Numbered R Code Title :::::: ::: ::::{.my-r-code-container} ```{r} #| label: num-r-code-label 1 + 1 ``` :::: ::::: ### num-r-code-listing {#sec-annex-num-r-code-listing} :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-ID-text} : Numbered R Code Listing Title :::::: ::: ::::{.my-r-code-container} ::: {#lst-listing-ID} ```{r} #| label: num-r-code-listing-label 1 + 1 ``` Listing title ::: :::: ::::: ## R Code Collection ### my-example {#sec-annex-my-example} :::::{.my-example} :::{.my-example-header} Title for my example ::: ::::{.my-example-container} Here include text :::: ::::: ### num-example {#sec-annex-num-example} :::::{.my-example} :::{.my-example-header} :::::: {#exm-ID-text} : Numbered Example Title :::::: ::: ::::{.my-example-container} Here include example text :::: ::::: ### ab-code {#sec-annex-ab-code} ::: {.my-code-collection} :::: {.my-code-collection-header} ::::: {.my-code-collection-icon} ::::: :::::: {#exm-ID} : Title for code collection :::::: :::: ::::{.my-code-collection-container} ::: {.panel-tabset} ###### header1 :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-code-name-a} : Numbered R Code Title (Original) :::::: ::: ::::{.my-r-code-container} ```{r} #| label: text-a 1 + 1 ``` :::: ::::: ###### header2 :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-code-name-b} : Numbered R Code Title (Tidyverse) :::::: ::: ::::{.my-r-code-container} ```{r} #| label: text-b 1 + 1 ``` :::: ::::: ::: :::: ::::: ### ab-code2 {#sec-annex-ab-code2} ::: {.my-collection} :::: {.my-collection-header} ::::: {.my-collection-icon} ::::: :::::: {#col-ID} :::::: :::: ::::{.my-collection-body} ::: {.panel-tabset} ###### header1 :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-code-name-a} : Numbered R Code Title (Original) :::::: ::: ::::{.my-r-code-container} ::: {#lst-listing-ID} ```{r} #| label: code-collectin-a 1 + 1 ``` Listing text ::: :::: ::::: ###### header2 :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-code-name-b} : Numbered R Code Title (Tidyverse) :::::: ::: ::::{.my-r-code-container} ::: {#lst-listing-ID} ```{r} #| label: code-collection-b 1 + 1 ``` Listing text ::: :::: ::::: ::: :::: ::::: ## Screenshot ### figure {#sec-annex-figure} ![Demonstration](img/invoke-debugger-min.png){#fig-annex-figure fig-alt="alt-text" fig-align="center" width="70%"} ### figure-border {#sec-annex-figure-border} <div style="border: 2px solid black; padding: 5px;"> ![title](img/invoke-debugger-min.png){#fig-annex-figure-border fig-alt="alt-text" fig-align="center" width="70%"} </div> ## Listing / Listing/Output {#sec-annex-listing-output} There is no snippet for listings. Listings is included in `num-r-code-listing` (see: @sec-annex-num-r-code-listing). ## Remark ### my-remark {#sec-annex-my-remark} :::::{.my-remark} :::{.my-remark-header} Title for remark ::: ::::{.my-remark-container} Here include remark lines :::: ::::: ### num-remark {#sec-annex-num-remark} :::::{.my-remark} :::{.my-remark-header} :::::: {#rem-remark} : Numbered Remark Title :::::: ::: ::::{.my-remark-container} Here include remark text :::: ::::: ## Report ### num-report {#sec-annex-num-report} ::: {.my-reportbox} ::::{.my-reportbox-header} ::::: {.my-reportbox-icon} ::::: :::::: {#rep-ID} :::::: : Numbered Reportbox Title :::: :::: {.my-reportbox-body} Here include report box text :::: ::: ## Resource ### my-resource {#sec-annex-my-resource} :::::{.my-resource} :::{.my-resource-header} Title for resource ::: ::::{.my-resource-container} Here include resource text :::: ::::: ### num-resource {#sec-annex-num-resource} :::::{.my-resource} :::{.my-resource-header} :::::: {#lem-resource-text} : Numbered Resource Title :::::: ::: ::::{.my-resource-container} Here include text for the resource :::: ::::: ## R Code Shiny ### num-r-shiny {#sec-annex-num-r-shiny} :::{.column-page} :::::{.my-r-code} :::{.my-r-code-header} :::::: {#cnj-ID-text} : Numbered R Code Title :::::: ::: ::::{.my-r-code-container} ```{shinylive-r} #| standalone: true #| viewerHeight: 550 #| components: [editor, viewer] #| layout: vertical library(shiny) start coding here ``` :::: ::::: ::: ## Solution ### sr2 {#sec-annex-sr2} :::::{.my-exercise} :::{.my-exercise-header} Exercise ID: Header ::: ::::{.my-exercise-container} Description more in Detail *** **My Solution** Here comes the solution :::: ::::: The above box is intended for the text description of a task or challenge, followed by the R code as the solution. But it has no numbering! ### my-solution {#sec-annex-my-solution} :::::{.my-solution} :::{.my-solution-header} Solution: ::: ::::{.my-solution-container} Here include solution text :::: ::::: ### num-solution {#sec-annex-num-solution} :::::{.my-solution} :::{.my-solution-header} :::::: {#sol-solution-text} : Numbered Solution Title :::::: ::: ::::{.my-solution-container} Here include text for the solution :::: ::::: ## Table / Table {#sec-annex-table} No changes, no snippet. ## Tip ### my-tip {#sec-annex-my-tip} :::::{.my-tip} :::{.my-tip-header} Title for Tip / Hint ::: ::::{.my-tip-container} Here include text for tip / hint box :::: ::::: ## Theorem ### formula {#sec-annex-formula} $$ \begin{align*} formula \end{align*} $$ {#eq-cross-ref-ID} Read [Mathematics in R Markdown](https://rpruim.github.io/s341/S19/from-class/MathinRmd.html) The numbering for theorems / formula is different than from the other cross-references / callout boxes. ### my-theorem {#sec-annex-my-theorem} :::::{.my-theorem} :::{.my-theorem-header} Title of theorem ::: ::::{.my-theorem-container} Here include theorem text :::: ::::: ### num-theorem {#sec-annex-num-theorem} :::::{.my-theorem} :::{.my-theorem-header} :::::: {#thm-theorem-text} : Numbered Theorem Title :::::: ::: ::::{.my-theorem-container} $$ \begin{align*} \text{Here include text for the theorem} \end{align*} $$ {#eq-chapXY-formula} :::: ::::: ## Typo ### my-typo {#sec-annex-my-typo} :::::{.my-typo} :::{.my-typo-header} Typo Title ::: ::::{.my-typo-container} Here include typo text :::: ::::: ## Watch ### my-watch {#sec-annex-my-watch} :::::{.my-watch} :::{.my-watch-header} Title for watch-out text ::: ::::{.my-watch-container} Here include watch-out text :::: ::::: ### num-watch {#sec-annex-num-watch} :::{.num-watch} :::: {.num-watch-header} ::::: {.num-watch-icon} ::::: :::::: {#wat-Watch-out-ID} :::::: : Title for watch-out text :::: :::: {.num-watch-body} Here include watch-out text :::: ::: ## Glossary Entries {#unnumbered} ```{r} #| label: glossary-table #| echo: false glossary_table() ``` ------------------------------------------------------------------------ ## Session Info {.unnumbered} ::: my-r-code ::: my-r-code-header Session Info ::: ::: my-r-code-container ```{r} #| label: session-info sessioninfo::session_info() ``` ::: :::